STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF08261.1V8-like Glu-specific endopeptidase; Belongs to the peptidase S1B family. (316 aa)    
Predicted Functional Partners:
SMF22837.1
Peptidase family M28.
  
 
 0.816
SMF51626.1
Chitinase, GH18 family; Belongs to the glycosyl hydrolase 18 family.
  
 
  0.725
SMF12493.1
Tetratricopeptide repeat-containing protein.
  
 
 0.683
SME97128.1
Hypothetical protein.
   
 
 0.661
SME96949.1
Serine protease Do.
   
 
 0.660
SME93778.1
Serine protease Do; Belongs to the peptidase S1C family.
   
 
 0.660
SMF38251.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
   
 
 0.660
SMF38261.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
   
 
 0.660
SMF50056.1
V8-like Glu-specific endopeptidase.
   
 
 0.660
SMF77253.1
Trypsin-like peptidase domain-containing protein.
   
 
 0.660
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.