STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF19031.1Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. (261 aa)    
Predicted Functional Partners:
SME97157.1
Nitrite and sulphite reductase 4Fe-4S domain-containing protein.
  
 0.977
SMF29976.1
Assimilatory nitrite reductase (NAD(P)H) large subunit precursor; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 0.977
SMF46466.1
BFD-like [2Fe-2S] binding domain-containing protein.
  
 0.977
SMF29957.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.854
SMF32765.1
Glutamate synthase (ferredoxin).
  
 
 0.852
SMF32979.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
  
 
 0.840
SMF22152.1
Ferredoxin-NADP reductase.
  
 
 0.806
SMF40132.1
Uroporphyrinogen III methyltransferase / synthase; Belongs to the precorrin methyltransferase family.
  
  
 0.778
SMF02616.1
Glyoxylase, beta-lactamase superfamily II.
  
 
 0.776
SMF16269.1
Glyoxylase, beta-lactamase superfamily II.
  
 
 0.776
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.