STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
SMF29566.1Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. (152 aa)    
Predicted Functional Partners:
SMF29608.1
Heme exporter protein C.
 
 0.999
SMF29614.1
ABC-type transport system involved in cytochrome c biogenesis, permease component.
 
 
 0.988
SME94236.1
ABC-type uncharacterized transport system, permease component.
  
 0.987
SME97584.1
Cytochrome c-type biogenesis protein CcmF.
 
 
 0.976
SMF29637.1
Heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.
 
 
 0.961
SMF29554.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
     0.926
SME97602.1
Cytochrome c-type biogenesis protein CcmH/NrfF; Possible subunit of a heme lyase.
 
  
 0.878
SMF29581.1
Heme exporter protein D (CcmD); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
       0.773
SMF29653.1
Hypothetical protein.
       0.741
SMF29679.1
Hypothetical protein.
  
  
 0.610
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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