STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF39962.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
SMF39953.1
Hypothetical protein.
       0.773
SMF39944.1
Hypothetical protein.
       0.522
SMF39901.1
Hypothetical protein.
       0.429
SMF39910.1
Hypothetical protein.
       0.429
SMF39921.1
Hypothetical protein.
       0.429
SMF39934.1
Hypothetical protein.
       0.429
SMF39842.1
Hypothetical protein.
       0.426
SMF39889.1
Hypothetical protein.
       0.426
SMF39980.1
Hypothetical protein.
       0.416
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.