SMF56884.1 protein (Pseudobacteriovorax antillogorgiicola)

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second shell of interactors

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Known Interactions

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Predicted Interactions

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Score

SMF56884.1

Hypothetical protein. (270 aa)

Predicted Functional Partners:

SME95772.1

0.999

SME97988.1

0.999

SMF00504.1

0.999

SMF00746.1

0.999

SMF00141.1

0.999

SMF06125.1

0.999

SMF06713.1

0.999

SMF04978.1

0.999

SMF26408.1

0.999

SMF30692.1

0.999

Your Current Organism:

Pseudobacteriovorax antillogorgiicola

NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SME95772.1	SME97988.1	SAMN06296036_102237	SAMN06296036_102406	7TM diverse intracellular signalling.	Signal transduction histidine kinase.	0.999
SME95772.1	SMF00141.1	SAMN06296036_102237	SAMN06296036_10377	7TM diverse intracellular signalling.	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.	0.999
SME95772.1	SMF00504.1	SAMN06296036_102237	SAMN06296036_103106	7TM diverse intracellular signalling.	PAS domain S-box-containing protein.	0.999
SME95772.1	SMF00746.1	SAMN06296036_102237	SAMN06296036_103130	7TM diverse intracellular signalling.	Two-component system, chemotaxis family, CheB/CheR fusion protein.	0.999
SME95772.1	SMF04978.1	SAMN06296036_102237	SAMN06296036_10435	7TM diverse intracellular signalling.	Signal transduction histidine kinase.	0.999
SME95772.1	SMF06125.1	SAMN06296036_102237	SAMN06296036_104113	7TM diverse intracellular signalling.	Signal transduction histidine kinase.	0.999
SME95772.1	SMF06713.1	SAMN06296036_102237	SAMN06296036_104156	7TM diverse intracellular signalling.	PAS domain S-box-containing protein.	0.999
SME95772.1	SMF26408.1	SAMN06296036_102237	SAMN06296036_108144	7TM diverse intracellular signalling.	Response regulator receiver domain-containing protein.	0.999
SME95772.1	SMF30692.1	SAMN06296036_102237	SAMN06296036_109188	7TM diverse intracellular signalling.	Response regulator receiver domain-containing protein.	0.999
SME95772.1	SMF56884.1	SAMN06296036_102237	SAMN06296036_11871	7TM diverse intracellular signalling.	Hypothetical protein.	0.999
SME97988.1	SME95772.1	SAMN06296036_102406	SAMN06296036_102237	Signal transduction histidine kinase.	7TM diverse intracellular signalling.	0.999
SME97988.1	SMF00141.1	SAMN06296036_102406	SAMN06296036_10377	Signal transduction histidine kinase.	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.	0.999
SME97988.1	SMF00504.1	SAMN06296036_102406	SAMN06296036_103106	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.998
SME97988.1	SMF00746.1	SAMN06296036_102406	SAMN06296036_103130	Signal transduction histidine kinase.	Two-component system, chemotaxis family, CheB/CheR fusion protein.	0.998
SME97988.1	SMF04978.1	SAMN06296036_102406	SAMN06296036_10435	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SME97988.1	SMF06125.1	SAMN06296036_102406	SAMN06296036_104113	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SME97988.1	SMF06713.1	SAMN06296036_102406	SAMN06296036_104156	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SME97988.1	SMF26408.1	SAMN06296036_102406	SAMN06296036_108144	Signal transduction histidine kinase.	Response regulator receiver domain-containing protein.	0.999
SME97988.1	SMF30692.1	SAMN06296036_102406	SAMN06296036_109188	Signal transduction histidine kinase.	Response regulator receiver domain-containing protein.	0.999
SME97988.1	SMF56884.1	SAMN06296036_102406	SAMN06296036_11871	Signal transduction histidine kinase.	Hypothetical protein.	0.999

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006810

Transport

11 of 271

1.05

1.36

3.63e-09

GO:0015833

Peptide transport

2 of 4

2.14

0.81

0.0315

GO:0055085

Transmembrane transport

6 of 195

0.93

0.66

0.0070

GO:0071702

Organic substance transport

4 of 79

1.15

0.62

0.0310

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:1904680

Peptide transmembrane transporter activity

2 of 5

2.05

0.76

0.0378

GO:0005524

ATP binding

7 of 359

0.73

0.43

0.0378

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030288

Outer membrane-bounded periplasmic space

2 of 5

2.05

1.13

0.0071

GO:0005886

Plasma membrane

11 of 374

0.91

1.06

1.26e-08

GO:0043190

ATP-binding cassette (ABC) transporter complex

2 of 8

1.84

0.98

0.0120

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3855

Solute-binding protein family 5, and Oligopeptide/dipeptide ABC transporter, C-terminal

6 of 6

2.44

4.82

2.45e-10

CL:3753

Mixed, incl. ABC transporters, and FtsX-like permease family

9 of 80

1.49

2.67

2.45e-10

CL:3755

Mixed, incl. ABC transporter-like, ATP-binding domain, and FtsX-like permease family

8 of 65

1.53

2.63

2.42e-09

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

ctm02024

Quorum sensing

7 of 34

1.76

3.27

1.55e-09

ctm02010

ABC transporters

3 of 41

1.31

0.72

0.0229

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-1222499

Latent infection - Other responses of Mtb to phagocytosis

4 of 36

1.49

1.54

0.00012

MAP-9635486

Infection with Mycobacterium tuberculosis

4 of 60

1.27

1.18

0.00041

MAP-5663205

Infectious disease

4 of 65

1.23

1.15

0.00041

MAP-1643685

Disease

4 of 66

1.23

1.14

0.00041

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0067

ATP-binding

7 of 233

0.92

0.78

0.00082

KW-0813

Transport

4 of 78

1.15

0.78

0.0089

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00496

Bacterial extracellular solute-binding proteins, family 5 Middle

2 of 2

2.44

0.83

0.0310

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR003439

ABC transporter-like, ATP-binding domain

7 of 35

1.74

2.95

2.11e-08

IPR017871

ABC transporter-like, conserved site

6 of 27

1.79

2.72

2.66e-07

IPR003593

AAA+ ATPase domain

7 of 82

1.37

1.79

1.70e-06

IPR039424

Solute-binding protein family 5

2 of 2

2.44

0.96

0.0173

IPR030678

Peptide/nickel binding protein, MppA-type

2 of 2

2.44

0.96

0.0173

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00382

ATPases associated with a variety of cellular activities

7 of 79

1.39

1.94

3.23e-07

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