STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF57862.1Tetratricopeptide repeat-containing protein. (416 aa)    
Predicted Functional Partners:
SMF50204.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 0.996
SMF59584.1
Hpt domain-containing protein.
  
 0.982
SMF60190.1
PAS fold-containing protein.
  
 0.980
SMF00141.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
 0.979
SMF58293.1
Signal transduction histidine kinase.
  
 0.976
SMF55116.1
Signal transduction histidine kinase.
  
 0.973
SMF47007.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
 0.972
SMF36217.1
Signal transduction histidine kinase.
  
 0.971
SMF63198.1
PAS domain S-box-containing protein.
  
 0.971
SMF73262.1
PAS domain S-box-containing protein.
  
 0.971
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.