STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF60246.17TM diverse intracellular signalling. (693 aa)    
Predicted Functional Partners:
SME97988.1
Signal transduction histidine kinase.
 
 0.999
SMF00504.1
PAS domain S-box-containing protein.
 
0.999
SMF00746.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
0.999
SMF02180.1
Response regulator receiver domain-containing protein.
 
 0.999
SMF00141.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
 0.999
SMF06125.1
Signal transduction histidine kinase.
 
 0.999
SMF06713.1
PAS domain S-box-containing protein.
 
 0.999
SMF04978.1
Signal transduction histidine kinase.
 
 0.999
SMF26408.1
Response regulator receiver domain-containing protein.
 
 0.999
SMF30692.1
Response regulator receiver domain-containing protein.
 
 0.999
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.