STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF60073.1Protein N-acetyltransferase, RimJ/RimL family. (161 aa)    
Predicted Functional Partners:
SMF26116.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
   
 0.911
SMF80035.1
Lysine N6-hydroxylase.
  
 
 0.881
SMF80039.1
Aerobactin synthase.
 
 
 0.865
SMF80055.1
N2-citryl-N6-acetyl-N6-hydroxylysine synthase.
 
 
 0.865
SMF75644.1
Spore coat polysaccharide biosynthesis protein SpsG, predicted glycosyltransferase.
  
 
 0.845
SMF16871.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
 0.815
SMF73893.1
Predicted amidohydrolase.
  
 
 0.776
SMF32765.1
Glutamate synthase (ferredoxin).
  
 
 0.774
SMF58134.1
Hypothetical protein.
    
 
 0.773
SMF60065.1
Coniferyl-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.766
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.