STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF66318.1CHAT domain-containing protein. (2397 aa)    
Predicted Functional Partners:
SMF66301.1
Hypothetical protein.
     
 0.795
SMF66310.1
Protein of unknown function.
       0.773
SMF24623.1
Putative amidoligase enzyme.
     
 0.709
SMF24882.1
Transglutaminase-like superfamily protein.
     
 0.709
SMF55116.1
Signal transduction histidine kinase.
    
 0.708
SMF79318.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.699
SMF43607.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.690
SMF71045.1
RNA polymerase sigma factor, TIGR02999 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.686
SMF00580.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
   
    0.679
SMF64476.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
   
    0.679
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.