STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF74185.1Outer membrane lipoprotein-sorting protein. (256 aa)    
Predicted Functional Partners:
SMF74212.1
Hypothetical protein.
  
 0.916
SMF56626.1
Putative ABC transport system permease protein.
 
 
 
 0.893
SMF56632.1
ABC-type transport system, involved in lipoprotein release, permease component.
 
 
 
 0.882
SMF37631.1
Putative ABC transport system ATP-binding protein.
   
 
 0.879
SMF37639.1
ABC-type transport system, involved in lipoprotein release, permease component.
 
 
 
 0.879
SMF18066.1
Putative ABC transport system permease protein.
 
 
 
 0.878
SME99620.1
Lipoprotein-releasing system permease protein.
 
 
 
 0.872
SMF56639.1
Putative ABC transport system ATP-binding protein.
   
 
 0.856
SMF79360.1
Lipoprotein-releasing system permease protein.
   
 
 0.855
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
   
 
 0.854
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.