STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF78982.1Ribosomal-protein-alanine N-acetyltransferase. (146 aa)    
Predicted Functional Partners:
SMF04826.1
CheC, inhibitor of MCP methylation.
    
   0.803
SMF54423.1
Chemotaxis protein CheC.
    
   0.803
SMF60182.1
Hypothetical protein.
    
   0.803
SMF78973.1
Heptosyltransferase-2.
  
  
 0.791
SME87752.1
tRNA A37 threonylcarbamoyladenosine modification protein TsaB.
  
 0.778
SMF76345.1
Dihydroneopterin aldolase.
  
 
 0.777
SMF78991.1
Hypothetical protein.
       0.773
SMF75739.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.723
SMF33024.1
L-lysine 6-transaminase precursor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.702
SMF62097.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
   
 0.684
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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