STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF80825.1Phage-related baseplate assembly protein. (272 aa)    
Predicted Functional Partners:
SMF80820.1
Hypothetical protein.
  
 
 0.992
SMF48814.1
Hypothetical protein.
 
 
 0.988
SMF80832.1
Hypothetical protein.
  
 
 0.988
SMF84386.1
Hypothetical protein.
 
 
 0.988
SMF84694.1
Hypothetical protein.
 
 
 0.988
SMF84753.1
Hypothetical protein.
 
 
 0.988
SMF80838.1
Hypothetical protein.
  
 
 0.987
SMF84698.1
Phage tail sheath protein.
 
 
 0.987
SMF84759.1
Phage tail sheath protein.
 
 
 0.987
SMF80791.1
Bacteriophage lambda head decoration protein D.
  
 
 0.986
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.