STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF80408.1Site-specific DNA recombinase. (199 aa)    
Predicted Functional Partners:
SMF80417.1
Transposase and inactivated derivatives, TnpA family.
 
   
 0.824
SMF25214.1
Site-specific DNA recombinase.
  
     0.774
SMF48814.1
Hypothetical protein.
   
  
 0.698
SMF84386.1
Hypothetical protein.
   
  
 0.698
SMF81632.1
Phage-related baseplate assembly protein.
  
    0.678
SMF80825.1
Phage-related baseplate assembly protein.
  
    0.674
SMF80820.1
Hypothetical protein.
   
  
 0.671
SMF48835.1
Hypothetical protein.
   
  
 0.669
SMF84379.1
Hypothetical protein.
   
  
 0.669
SMF80812.1
Phage baseplate assembly protein V.
   
  
 0.668
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.