STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF82154.1Lanthionine synthetase C-like protein. (405 aa)    
Predicted Functional Partners:
SMF43333.1
Fibronectin type III domain-containing protein.
  
   
 0.743
SMF41013.1
Outer membrane protein TolC.
  
     0.742
SMF03186.1
Trypsin.
  
     0.734
SMF03103.1
Trypsin.
  
     0.713
SMF12436.1
Papain family cysteine protease.
  
     0.711
SMF76561.1
Dipeptidase E; Belongs to the peptidase S51 family.
  
     0.704
SMF59648.1
TRAP transporter T-component.
  
     0.684
SMF71315.1
V8-like Glu-specific endopeptidase.
  
     0.671
SMF62139.1
Trypsin.
  
     0.654
SMF82164.1
Hypothetical protein.
       0.648
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.