STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB67120.1DNA-binding regulatory protein, YebC/PmpR family. (241 aa)    
Predicted Functional Partners:
SKB67143.1
Nucleoside-diphosphate-sugar epimerase.
   
   0.901
rplS
Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
   0.734
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   0.663
SKB56442.1
Trigger factor.
 
  
 0.626
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
  
 0.619
SKB80033.1
Starch synthase.
    
  0.586
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
    
  0.586
SKB63977.1
Phosphomannomutase.
    
  0.585
SKB96079.1
Phosphoglucomutase.
    
  0.585
rpmF
Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
  
 0.571
Your Current Organism:
Sphingobacterium nematocida
NCBI taxonomy Id: 1513896
Other names: CCTCC AB 2010390, DSM 24091, JCM 17339, S. nematocida, Sphingobacterium nematocida Liu et al. 2012, strain M-SX103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.