STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPB00557.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (78 aa)    
Predicted Functional Partners:
KPB00599.1
Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
KPB00556.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.439
dapD
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transferase hexapeptide repeat family.
       0.439
KPB00555.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
Your Current Organism:
Ahrensia marina
NCBI taxonomy Id: 1514904
Other names: A. marina, Ahrensia marina Liu et al. 2016, Ahrensia sp. LZD062, DSM 28886, JCM 30117, MCCC 1K00254, strain LZD062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.