STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG53984.1Outer membrane protein (porin). (395 aa)    
Predicted Functional Partners:
SMG55192.1
Outer membrane protein (porin).
  
  
  0.882
SMG55576.1
Outer membrane protein (porin).
  
  
  0.763
SMG56498.1
Acetyltransferase (GNAT) family protein.
  
     0.731
SMG21574.1
Outer membrane autotransporter barrel domain-containing protein.
 
    0.720
SMG21313.1
Outer membrane protein (porin).
  
  
 
0.673
SMG55453.1
Outer membrane protein (porin).
  
  
 
0.673
SMG60425.1
Outer membrane protein (porin).
  
  
 
0.671
SMG59527.1
Outer membrane protein (porin).
  
  
 
0.670
SMG58428.1
Outer membrane protein (porin).
  
  
 
0.666
SMG33976.1
Outer membrane protein (porin).
  
  
 
0.665
Your Current Organism:
Paraburkholderia susongensis
NCBI taxonomy Id: 1515439
Other names: Burkholderia sp. L226, Burkholderia susongensis, Burkholderia susongensis Gu et al. 2015, CCTCC AB 2014142, CCTCC:AB2014142, JCM 30231, P. susongensis, Paraburkholderia susongensis (Gu et al. 2015) Dobritsa and Samadpour 2016, strain L226
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.