STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG59784.1Cytochrome b561. (196 aa)    
Predicted Functional Partners:
pqqB
Pyrroloquinoline quinone biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
       0.786
SMG59782.1
Prolyl aminopeptidase Serine peptidase. MEROPS family S33.
       0.786
SMG61456.1
Cytochrome b561.
  
     0.736
SMG57825.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
  
 0.662
SMG42517.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
  
 0.653
SMG59786.1
Formylmethanofuran dehydrogenase, subunit C.
       0.578
ffsA
Formylmethanofuran--tetrahydromethanopterin formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
       0.578
SMG58561.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
 
  
 0.547
SMG59770.1
Two component transcriptional regulator, LuxR family.
       0.545
pqqE
Pyrroloquinoline quinone biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
       0.545
Your Current Organism:
Paraburkholderia susongensis
NCBI taxonomy Id: 1515439
Other names: Burkholderia sp. L226, Burkholderia susongensis, Burkholderia susongensis Gu et al. 2015, CCTCC AB 2014142, CCTCC:AB2014142, JCM 30231, P. susongensis, Paraburkholderia susongensis (Gu et al. 2015) Dobritsa and Samadpour 2016, strain L226
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