STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EVAR_1460_1SpoU_methylase domain-containing protein. (113 aa)    
Predicted Functional Partners:
rsmE
Ribosomal RNA small subunit methyltransferase E.
     
 0.559
EVAR_88638_1
tRNA (Guanine-N(7)-)-methyltransferase.
  
  
 0.516
trmB
tRNA (Guanine-N(7)-)-methyltransferase.
  
  
 0.516
EVAR_15627_1
Probable transcriptional regulatory protein ETA_14870.
  
  
 0.483
murG
annotation not available
     
 0.481
TRIT1
tRNA dimethylallyltransferase.
     
 0.474
Trit1
tRNA dimethylallyltransferase.
     
 0.474
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase.
     
 0.474
ubiG
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
     
 0.472
Coq3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial.
     
 0.472
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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