STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puf-3Ubiquitin carboxyl-terminal hydrolase puf. (281 aa)    
Predicted Functional Partners:
EVAR_81263_1
Ubiquitin-40S ribosomal protein S27a.
   
 0.923
RpL40
Ubiquitin-60S ribosomal protein L40.
    
  0.879
UBA52
Ubiquitin-60S ribosomal protein L40.
    
  0.859
ubq-1
Polyubiquitin-A.
   
 0.821
ubq-1-2
Polyubiquitin-A.
   
 0.821
ash1
Histone-lysine N-methyltransferase ash1.
   
 
 0.806
BIRC6
Baculoviral IAP repeat-containing protein 6.
   
 0.788
Birc6
Baculoviral IAP repeat-containing protein 6.
   
 0.788
DIDO1
Death-inducer obliterator 1.
   
 
  0.779
Nedd8
NEDD8.
   
 0.721
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.