Dync1li2 protein (Eumeta japonica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Dync1li2

Cytoplasmic dynein 1 light intermediate chain 2. (168 aa)

Predicted Functional Partners:

sw

0.966

sw-2

0.966

DCTN2-p50

0.961

BicD

0.961

Dynlrb2

0.956

Dynlt1

0.940

Capzb

0.938

Actr1a

0.915

DYH1B

0.900

Cdlc2

0.889

Your Current Organism:

Eumeta japonica

NCBI taxonomy Id: 151549
Other names: E. japonica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Actr1a	BicD	A0A4C1XN75	A0A4C1WXN7	Alpha-centractin.	Protein bicaudal D.	0.825
Actr1a	Capzb	A0A4C1XN75	A0A4C1T8N7	Alpha-centractin.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.989
Actr1a	Cdlc2	A0A4C1XN75	A0A4C1U347	Alpha-centractin.	Dynein light chain.	0.921
Actr1a	DCTN2-p50	A0A4C1XN75	A0A4C1ST99	Alpha-centractin.	Dynactin subunit 2.	0.997
Actr1a	DYH1B	A0A4C1XN75	A0A4C1VX84	Alpha-centractin.	Cytoplasmic dynein 2 heavy chain 1.	0.655
Actr1a	Dync1li2	A0A4C1XN75	A0A4C1V069	Alpha-centractin.	Cytoplasmic dynein 1 light intermediate chain 2.	0.915
Actr1a	Dynlrb2	A0A4C1XN75	A0A4C1UNF5	Alpha-centractin.	Dynein light chain roadblock.	0.554
Actr1a	sw	A0A4C1XN75	A0A4C1T631	Alpha-centractin.	Cytoplasmic dynein 1 intermediate chain.	0.894
Actr1a	sw-2	A0A4C1XN75	A0A4C1T7R4	Alpha-centractin.	Cytoplasmic dynein 1 intermediate chain.	0.894
BicD	Actr1a	A0A4C1WXN7	A0A4C1XN75	Protein bicaudal D.	Alpha-centractin.	0.825
BicD	Capzb	A0A4C1WXN7	A0A4C1T8N7	Protein bicaudal D.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.733
BicD	Cdlc2	A0A4C1WXN7	A0A4C1U347	Protein bicaudal D.	Dynein light chain.	0.814
BicD	DCTN2-p50	A0A4C1WXN7	A0A4C1ST99	Protein bicaudal D.	Dynactin subunit 2.	0.990
BicD	DYH1B	A0A4C1WXN7	A0A4C1VX84	Protein bicaudal D.	Cytoplasmic dynein 2 heavy chain 1.	0.693
BicD	Dync1li2	A0A4C1WXN7	A0A4C1V069	Protein bicaudal D.	Cytoplasmic dynein 1 light intermediate chain 2.	0.961
BicD	sw	A0A4C1WXN7	A0A4C1T631	Protein bicaudal D.	Cytoplasmic dynein 1 intermediate chain.	0.945
BicD	sw-2	A0A4C1WXN7	A0A4C1T7R4	Protein bicaudal D.	Cytoplasmic dynein 1 intermediate chain.	0.945
Capzb	Actr1a	A0A4C1T8N7	A0A4C1XN75	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Alpha-centractin.	0.989
Capzb	BicD	A0A4C1T8N7	A0A4C1WXN7	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Protein bicaudal D.	0.733
Capzb	Cdlc2	A0A4C1T8N7	A0A4C1U347	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Dynein light chain.	0.872