STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpAATP-dependent RNA helicase HrpA. (1300 aa)    
Predicted Functional Partners:
Cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.997
SmD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.978
SmF
Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.975
smd2
Small nuclear ribonucleoprotein Sm D2.
   
  0.971
SNRPG
Small nuclear ribonucleoprotein G.
   
  0.970
Syf2
Pre-mRNA-splicing factor Syf2.
    
 0.967
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.967
RBM17
Splicing factor 45.
   
 0.967
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.963
PDCD11
Protein RRP5 homolog.
  
 0.963
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.