STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vps52Vacuolar protein sorting-associated protein 52 homolog. (591 aa)    
Predicted Functional Partners:
scat
Vacuolar protein sorting-associated protein 54.
    
 0.998
VPS53
Vacuolar protein sorting-associated protein 53 homolog.
   
 0.997
Vps51
Vacuolar protein sorting-associated protein 51 homolog.
   
 0.995
EVAR_46554_1
Uncharacterized protein.
   
 
 0.955
Rab6a
Ras-related protein Rab-6A.
    
 0.910
Rab6
Ras-related protein Rab6.
    
 0.910
shh
Sonic hedgehog protein.
    
 
 0.878
SHH
Sonic hedgehog protein.
    
 
 0.878
Cog3
Conserved oligomeric Golgi complex subunit 3.
    
 0.866
Stx16
Syntaxin-16; Belongs to the syntaxin family.
    
 0.858
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.