STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycbBProbable L,D-transpeptidase YcbB. (625 aa)    
Predicted Functional Partners:
ftsI
Peptidoglycan D,D-transpeptidase FtsI.
     
 0.823
ftsI-2
Peptidoglycan D,D-transpeptidase FtsI.
     
 0.823
dacB
D-alanyl-D-alanine carboxypeptidase DacB.
     
 0.802
dacD
D-alanyl-D-alanine carboxypeptidase DacD.
   
 
 0.770
dacA
D-alanyl-D-alanine carboxypeptidase DacA.
   
 
 0.770
pbpG
D-alanyl-D-alanine endopeptidase.
   
 
 0.770
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
     
 0.467
ALAD
Delta-aminolevulinic acid dehydratase.
     
 0.467
ycbK
Uncharacterized protein YcbK.
  
     0.420
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.