STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagRHTH-type transcriptional activator NagR. (374 aa)    
Predicted Functional Partners:
pdeH
Cyclic di-GMP phosphodiesterase PdeH.
  
 
 0.887
cph2
Phytochrome-like protein cph2.
  
 0.726
yhcK
Uncharacterized protein YhcK.
  
 0.726
dgcM
Diguanylate cyclase DgcM.
  
 0.726
dgcQ
Probable diguanylate cyclase DgcQ.
  
 0.726
EVAR_42324_1
Uncharacterized protein Mb1389c.
  
 0.726
dgcC-3
Probable diguanylate cyclase DgcC.
  
 0.726
pleD
Response regulator PleD.
  
 0.726
cheB
Chemotaxis response regulator protein-glutamate methylesterase.
    
 0.705
cheR
Chemotaxis protein methyltransferase.
    
 0.705
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.