STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EVAR_22015_1MADF domain-containing protein. (581 aa)    
Predicted Functional Partners:
EVAR_33835_1
Ribosomal_L7Ae domain-containing protein.
   
 
 0.809
truB
tRNA pseudouridine synthase B.
   
 
 0.714
EVAR_18091_1
PUA domain-containing protein.
   
 
 0.714
TRUB2
Mitochondrial mRNA pseudouridine synthase TRUB2.
   
 
 0.588
shq1
Protein SHQ1 homolog.
   
 
 0.555
EVAR_95056_1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.538
EVAR_47141_1
Protein LTV1 homolog.
   
    0.471
EVAR_88409_1
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.466
RpS12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 
 0.442
EVAR_37012_1
Uncharacterized protein.
   
 
 0.442
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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