STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
l(3)72Ab-3U5 small nuclear ribonucleoprotein 200 kDa helicase. (252 aa)    
Predicted Functional Partners:
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.964
Prpf6
Pre-mRNA-processing factor 6.
   
 0.960
DDX23
Probable ATP-dependent RNA helicase DDX23.
   
 0.954
Sf3b3
Splicing factor 3B subunit 3.
   
 
 0.952
Txnl4a
Thioredoxin-like protein 4A.
    
 0.948
SmF
Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.944
SmD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.940
smd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.937
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.934
SNRPG
Small nuclear ribonucleoprotein G.
   
  0.929
Your Current Organism:
Eumeta japonica
NCBI taxonomy Id: 151549
Other names: E. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.