STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ48_01935Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)    
Predicted Functional Partners:
HQ48_01930
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.943
HQ48_06745
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.852
HQ48_06755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.802
HQ48_04610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.790
HQ48_08265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.780
HQ48_01945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
HQ48_08280
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
HQ48_09285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.773
HQ48_00890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.746
HQ48_06640
Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.706
Your Current Organism:
Porphyromonas sp. COT290OH3588
NCBI taxonomy Id: 1515617
Other names: P. sp. COT-290 OH3588, Porphyromonas sp. COT-290 OH3588, Porphyromonas sp. COT-290_OH3588CRE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.