STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQ10_11125Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (61 aa)    
Predicted Functional Partners:
CQ10_31570
Calcium sensor EFh; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.657
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.624
CQ10_11120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
CQ10_24955
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.595
atpG
ATP synthase F0F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.564
CQ10_11130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
CQ10_09315
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.540
CQ10_25145
Catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.497
rplQ
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.471
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
   0.468
Your Current Organism:
Bradyrhizobium valentinum
NCBI taxonomy Id: 1518501
Other names: B. valentinum, Bradyrhizobium sp. LmjM2, Bradyrhizobium sp. LmjM3, Bradyrhizobium sp. LmjM6, CECT 8364, LMG 2761, LMG:2761, strain LmjM3
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