STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC38673.1Protein of unknown function. (843 aa)    
Predicted Functional Partners:
SMC38664.1
Predicted dehydrogenase.
 
     0.965
SMC38689.1
Acetyl xylan esterase (AXE1); Manually curated.
 
     0.961
SMC38682.1
Sugar phosphate isomerase/epimerase.
 
     0.957
SMC38639.1
alpha-L-rhamnosidase.
 
     0.951
SMC39598.1
Glycosyl hydrolases family 43.
 
  
 0.926
SMC38654.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.924
SMC38701.1
Predicted neuraminidase (sialidase).
 
     0.924
SMC39610.1
Putative collagen-binding domain of a collagenase.
 
  
 0.918
SMC39565.1
BNR repeat-like domain-containing protein.
 
     0.917
SMC39619.1
Hypothetical protein.
 
     0.910
Your Current Organism:
Pedobacter africanus
NCBI taxonomy Id: 151894
Other names: CCUG 39353, CIP 105499, DSM 12126, LMG 10353, LMG:10353, NBRC 100065, NCIMB 13641, P. africanus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.