STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC39917.1TonB-linked outer membrane protein, SusC/RagA family. (1106 aa)    
Predicted Functional Partners:
SMC39909.1
Starch-binding associating with outer membrane.
 
 
   0.951
SMD06674.1
Starch-binding associating with outer membrane.
  
 
   0.821
SMD06689.1
Starch-binding associating with outer membrane.
  
 
   0.808
SMC37966.1
Starch-binding associating with outer membrane.
  
 
   0.806
SMC64456.1
Starch-binding associating with outer membrane.
  
 
   0.803
SMC67874.1
Starch-binding associating with outer membrane.
  
 
   0.802
SMC38018.1
Starch-binding associating with outer membrane.
  
 
   0.792
SMC39935.1
Starch-binding associating with outer membrane.
 
 
   0.785
SMC42006.1
Starch-binding associating with outer membrane.
  
 
   0.781
SMC89799.1
Starch-binding associating with outer membrane.
  
 
   0.778
Your Current Organism:
Pedobacter africanus
NCBI taxonomy Id: 151894
Other names: CCUG 39353, CIP 105499, DSM 12126, LMG 10353, LMG:10353, NBRC 100065, NCIMB 13641, P. africanus
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.