STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC45793.1Phage major capsid protein, HK97 family. (403 aa)    
Predicted Functional Partners:
SMC45861.1
Phage portal protein, HK97 family.
 
 
 
 0.946
SMC45799.1
Prohead serine protease.
 
  
 0.914
SMC45869.1
Terminase-like family protein.
 
     0.783
SMC39909.1
Starch-binding associating with outer membrane.
  
     0.724
SMC51645.1
IPT/TIG domain-containing protein.
  
     0.665
SMC45909.1
Bacteriophage Lambda NinG protein.
 
     0.627
SMC51586.1
Starch-binding associating with outer membrane.
  
     0.603
SMC59986.1
Beta-glucosidase.
   
   0.590
SMC87741.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
   
   0.590
SMC45749.1
Hypothetical protein.
       0.551
Your Current Organism:
Pedobacter africanus
NCBI taxonomy Id: 151894
Other names: CCUG 39353, CIP 105499, DSM 12126, LMG 10353, LMG:10353, NBRC 100065, NCIMB 13641, P. africanus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.