STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD00624.1TPR repeat-containing protein. (208 aa)    
Predicted Functional Partners:
SMC90632.1
Helix-turn-helix domain-containing protein.
  
 
   0.638
SMD00428.1
Tetratricopeptide repeat-containing protein.
 
 
 0.623
SMC69157.1
Signal transduction histidine kinase.
  
 
 0.606
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.602
SMC68515.1
Tetratricopeptide repeat-containing protein.
  
   0.600
SMC60942.1
Signal transduction histidine kinase.
  
 
 0.591
SMC76243.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
  
 0.591
SMD00605.1
Hypothetical protein.
 
     0.574
SMC73427.1
Tetratricopeptide repeat-containing protein.
  
   0.569
SMD06634.1
Hypothetical protein.
  
     0.563
Your Current Organism:
Pedobacter africanus
NCBI taxonomy Id: 151894
Other names: CCUG 39353, CIP 105499, DSM 12126, LMG 10353, LMG:10353, NBRC 100065, NCIMB 13641, P. africanus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.