Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yabGHypothetical protein. (294 aa)    
Predicted Functional Partners:
cotS_2
Hypothetical protein.
 
  
 0.697
spoIIIAE
Stage III sporulation protein AE.
  
   
 0.651
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.621
AND83431.1
Spore protease.
  
     0.590
AND83727.1
Hypothetical protein.
  
     0.585
AND83386.1
Hypothetical protein.
       0.575
spoIIIAD
Stage III sporulation protein AD.
  
     0.574
AND86206.1
Hypothetical protein.
  
     0.561
AND86287.1
Hypothetical protein.
  
     0.542
spoIVB
Stage IV sporulation protein B.
  
    0.539
Your Current Organism:
Clostridium tyrobutyricum
NCBI taxonomy Id: 1519
Other names: ATCC 25755, C. tyrobutyricum, CCUG 48315, CIP 105092, Clostridium sp. GPRE 4-2, DSM 2637, JCM 11008
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