Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gerABSpore germination protein-like protein. (751 aa)    
Predicted Functional Partners:
gerKA
Spore germination protein GerKA.
 
  
 0.938
spoIIR
Stage II sporulation protein R.
 
   
 0.821
AND83957.1
Spore germination protein.
 
  
 0.801
gerKA-2
Spore germination protein GerKA.
 
  
 0.777
gerBA_1
Spore germination protein GerKA.
 
  
 0.766
ypeB
Hypothetical protein.
 
   
 0.761
spoIIM
Stage II sporulation protein M.
  
   
 0.757
ylbJ
Hypothetical protein.
  
   
 0.741
grkA
Spore germination protein GRKA.
 
  
 0.728
spoIIE
Stage II sporulation protein E.
  
     0.725
Your Current Organism:
Clostridium tyrobutyricum
NCBI taxonomy Id: 1519
Other names: ATCC 25755, C. tyrobutyricum, CCUG 48315, CIP 105092, Clostridium sp. GPRE 4-2, DSM 2637, JCM 11008
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