Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cdr | pspE_2 | CTK_C04000 | CTK_C14520 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | Hypothetical protein. | 0.823 |
cdr | rplK | CTK_C04000 | CTK_C29000 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.601 |
cdr | rplM | CTK_C04000 | CTK_C28540 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.874 |
cdr | rplO | CTK_C04000 | CTK_C28690 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.868 |
cdr | rplQ | CTK_C04000 | CTK_C28590 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 50S ribosomal protein L17. | 0.867 |
cdr | rplU | CTK_C04000 | CTK_C24440 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.674 |
cdr | rplX | CTK_C04000 | CTK_C28770 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.574 |
cdr | rpsQ | CTK_C04000 | CTK_C28790 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.883 |
cdr | sod | CTK_C04000 | CTK_C25780 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | Superoxide dismutase (Fe/Mn family). | 0.948 |
cdr | ybeY | CTK_C04000 | CTK_C24120 | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.683 |
pspE_2 | cdr | CTK_C14520 | CTK_C04000 | Hypothetical protein. | CoA-disulfide reductase-related protein; Belongs to the sulfur carrier protein TusA family. | 0.823 |
pspE_2 | rplK | CTK_C14520 | CTK_C29000 | Hypothetical protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.599 |
pspE_2 | rplM | CTK_C14520 | CTK_C28540 | Hypothetical protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.630 |
pspE_2 | rplO | CTK_C14520 | CTK_C28690 | Hypothetical protein. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.568 |
pspE_2 | rplQ | CTK_C14520 | CTK_C28590 | Hypothetical protein. | 50S ribosomal protein L17. | 0.621 |
pspE_2 | rplU | CTK_C14520 | CTK_C24440 | Hypothetical protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.618 |
pspE_2 | rplX | CTK_C14520 | CTK_C28770 | Hypothetical protein. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.571 |
pspE_2 | rpsQ | CTK_C14520 | CTK_C28790 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.618 |
pspE_2 | sod | CTK_C14520 | CTK_C25780 | Hypothetical protein. | Superoxide dismutase (Fe/Mn family). | 0.659 |
pspE_2 | ybeY | CTK_C14520 | CTK_C24120 | Hypothetical protein. | Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.656 |
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