Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
acoR_4 | gutB | CTK_C16270 | CTK_C16260 | Transcription regulator. | Oxidoreductase. | 0.558 |
alsD | gutB | CTK_C06160 | CTK_C16260 | Alpha-acetolactate decarboxylase. | Oxidoreductase. | 0.919 |
gatC_1 | gatC_2 | CTK_C20860 | CTK_C23660 | PTS system Galactitol-specific IIC component. | PTS system galactitol-specific IIC component. | 0.924 |
gatC_1 | gutB | CTK_C20860 | CTK_C16260 | PTS system Galactitol-specific IIC component. | Oxidoreductase. | 0.482 |
gatC_2 | gatC_1 | CTK_C23660 | CTK_C20860 | PTS system galactitol-specific IIC component. | PTS system Galactitol-specific IIC component. | 0.924 |
gatC_2 | gutB | CTK_C23660 | CTK_C16260 | PTS system galactitol-specific IIC component. | Oxidoreductase. | 0.464 |
glgB | gutB | CTK_C29900 | CTK_C16260 | 1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | Oxidoreductase. | 0.424 |
gutB | acoR_4 | CTK_C16260 | CTK_C16270 | Oxidoreductase. | Transcription regulator. | 0.558 |
gutB | alsD | CTK_C16260 | CTK_C06160 | Oxidoreductase. | Alpha-acetolactate decarboxylase. | 0.919 |
gutB | gatC_1 | CTK_C16260 | CTK_C20860 | Oxidoreductase. | PTS system Galactitol-specific IIC component. | 0.482 |
gutB | gatC_2 | CTK_C16260 | CTK_C23660 | Oxidoreductase. | PTS system galactitol-specific IIC component. | 0.464 |
gutB | glgB | CTK_C16260 | CTK_C29900 | Oxidoreductase. | 1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | 0.424 |
gutB | ispG | CTK_C16260 | CTK_C17890 | Oxidoreductase. | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.634 |
gutB | ispH | CTK_C16260 | CTK_C15400 | Oxidoreductase. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.610 |
gutB | nifJ_1 | CTK_C16260 | CTK_C21650 | Oxidoreductase. | Pyruvate--ferredoxin/flavodoxin oxidoreductase. | 0.707 |
gutB | nifJ_2 | CTK_C16260 | CTK_C25530 | Oxidoreductase. | Pyruvate--ferredoxin/flavodoxin oxidoreductase. | 0.649 |
gutB | sod | CTK_C16260 | CTK_C25780 | Oxidoreductase. | Superoxide dismutase (Fe/Mn family). | 0.487 |
ispG | gutB | CTK_C17890 | CTK_C16260 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | Oxidoreductase. | 0.634 |
ispG | ispH | CTK_C17890 | CTK_C15400 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.809 |
ispH | gutB | CTK_C15400 | CTK_C16260 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | Oxidoreductase. | 0.610 |
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