STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cph2_2Hypothetical protein. (564 aa)    
Predicted Functional Partners:
rpfC
Hypothetical protein.
 
 0.995
dosC
Diguanylate cyclase/phosphodiesterase.
 
 
0.918
ycdT
Signal transduction protein.
 
0.906
cph2_3
Hypothetical protein.
 
 
0.827
tmoS
PAS domain S-box domain-containing protein.
 
 
 0.787
cheR
Chemotaxis protein methyltransferase.
 
  
 0.783
cph2_4
Sensory transduction protein.
 
 
 
0.778
rpfG_2
Metal dependent phosphohydrolase.
   
 0.761
rpfG_1
Hypothetical protein.
   
 0.760
bvgA
Response regulator.
  
 
 0.724
Your Current Organism:
Clostridium tyrobutyricum
NCBI taxonomy Id: 1519
Other names: ATCC 25755, C. tyrobutyricum, CCUG 48315, CIP 105092, Clostridium sp. GPRE 4-2, DSM 2637, JCM 11008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.