STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrF_2ABC transporter permease. (432 aa)    
Predicted Functional Partners:
ytrF_1
ABC transporter permease.
 
   
0.992
lolD_1
ABC transporter ATPase.
 
 0.990
lolD_2
ABC-type antimicrobial peptide transport system, ATPase component.
 
 0.948
macB_1
ABC transporter ATP-binding protein.
 
 0.936
AND83659.1
Antimicrobial peptide ABC transporter ATPase.
 
 0.906
AND83600.1
ABC transporter, ATPase component.
  
 
 0.637
AND86030.1
Hypothetical protein.
   
 
 0.602
ftsE
Cell division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
 
   
 0.513
mntR
Iron-dependent transcription repressor.
       0.504
glnQ_4
Amino acid ABC transporter ATPase.
 
     0.493
Your Current Organism:
Clostridium tyrobutyricum
NCBI taxonomy Id: 1519
Other names: ATCC 25755, C. tyrobutyricum, CCUG 48315, CIP 105092, Clostridium sp. GPRE 4-2, DSM 2637, JCM 11008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.