Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cph2_2 | cph2_3 | CTK_C20650 | CTK_C11920 | Hypothetical protein. | Hypothetical protein. | 0.827 |
cph2_2 | cph2_4 | CTK_C20650 | CTK_C17040 | Hypothetical protein. | Sensory transduction protein. | 0.778 |
cph2_2 | pleD | CTK_C20650 | CTK_C22460 | Hypothetical protein. | Hypothetical protein. | 0.660 |
cph2_2 | rpfC | CTK_C20650 | CTK_C20660 | Hypothetical protein. | Hypothetical protein. | 0.995 |
cph2_2 | rpfG_1 | CTK_C20650 | CTK_C06410 | Hypothetical protein. | Hypothetical protein. | 0.760 |
cph2_2 | rpfG_2 | CTK_C20650 | CTK_C26610 | Hypothetical protein. | Metal dependent phosphohydrolase. | 0.761 |
cph2_2 | spoIIAB | CTK_C20650 | CTK_C08850 | Hypothetical protein. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.663 |
cph2_3 | cph2_2 | CTK_C11920 | CTK_C20650 | Hypothetical protein. | Hypothetical protein. | 0.827 |
cph2_3 | cph2_4 | CTK_C11920 | CTK_C17040 | Hypothetical protein. | Sensory transduction protein. | 0.768 |
cph2_3 | pleD | CTK_C11920 | CTK_C22460 | Hypothetical protein. | Hypothetical protein. | 0.710 |
cph2_3 | rpfC | CTK_C11920 | CTK_C20660 | Hypothetical protein. | Hypothetical protein. | 0.982 |
cph2_3 | rpfG_1 | CTK_C11920 | CTK_C06410 | Hypothetical protein. | Hypothetical protein. | 0.754 |
cph2_3 | rpfG_2 | CTK_C11920 | CTK_C26610 | Hypothetical protein. | Metal dependent phosphohydrolase. | 0.805 |
cph2_4 | cph2_2 | CTK_C17040 | CTK_C20650 | Sensory transduction protein. | Hypothetical protein. | 0.778 |
cph2_4 | cph2_3 | CTK_C17040 | CTK_C11920 | Sensory transduction protein. | Hypothetical protein. | 0.768 |
cph2_4 | pleD | CTK_C17040 | CTK_C22460 | Sensory transduction protein. | Hypothetical protein. | 0.641 |
cph2_4 | rpfC | CTK_C17040 | CTK_C20660 | Sensory transduction protein. | Hypothetical protein. | 0.981 |
cph2_4 | rpfG_1 | CTK_C17040 | CTK_C06410 | Sensory transduction protein. | Hypothetical protein. | 0.747 |
cph2_4 | rpfG_2 | CTK_C17040 | CTK_C26610 | Sensory transduction protein. | Metal dependent phosphohydrolase. | 0.737 |
flgG | motA | CTK_C20090 | CTK_C00590 | Flagellar basal body rod protein FlgG. | Flagellar motor protein MotA. | 0.945 |
page 1 of 4