STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HY22_13075GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
HY22_07735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
HY22_13070
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.776
HY22_10900
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
HY22_10645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
  
  0.641
HY22_13065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
HY22_13080
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
HY22_05420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.421
Your Current Organism:
Thermochlorobacteriaceae bacterium GBChlB
NCBI taxonomy Id: 1519464
Other names: C. Thermochlorobacteriaceae bacterium GBChlB, Candidatus Thermochlorobacteriaceae bacterium GBChlB, Chlorobium sp. GBChlB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.