STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SME88824.1Protein of unknown function. (128 aa)    
Predicted Functional Partners:
SMF14717.1
Spore maturation protein CgeB.
  
     0.611
SMF15552.1
Glycosyl transferases group 1.
  
     0.593
SME93191.1
Conserved hypothetical protein.
  
     0.584
SMF25180.1
Zinc dependent phospholipase C.
  
     0.499
SME92976.1
LexA-binding, inner membrane-associated putative hydrolase.
  
     0.453
SME88818.1
Two-component system, chemotaxis family, response regulator CheY.
       0.449
SME90296.1
Class III cytochrome C family protein.
  
     0.424
Your Current Organism:
Desulfovibrio gilichinskyi
NCBI taxonomy Id: 1519643
Other names: D. gilichinskyi, DSM:100341, Desulfovibrio gilichinskyi Ryzhmanova et al. 2019, Desulfovibrio sp. K3S, VKM:B-2877, strain K3S
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.