STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SME89079.1Undecaprenyl-diphosphatase. (199 aa)    
Predicted Functional Partners:
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.932
SMF20845.1
Beta-ketoacyl synthase, N-terminal domain.
   
 0.831
SMF20483.1
Undecaprenyl-diphosphatase.
  
  
  0.826
SMF01661.1
Long-chain acyl-CoA synthetase.
    
 0.813
SMF20830.1
4-coumarate--CoA ligase, photoactive yellow protein activation family.
    
 0.813
SMF25622.1
fatty-acyl-CoA synthase.
    
 0.813
SMF20230.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
    
 0.792
SMF08767.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
    
 0.775
SME90600.1
Exosortase D, VPLPA-CTERM-specific.
    
 
 0.758
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.739
Your Current Organism:
Desulfovibrio gilichinskyi
NCBI taxonomy Id: 1519643
Other names: D. gilichinskyi, DSM:100341, Desulfovibrio gilichinskyi Ryzhmanova et al. 2019, Desulfovibrio sp. K3S, VKM:B-2877, strain K3S
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.