Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AJG96805.1 | AJG96807.1 | LF65_00114 | LF65_00116 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Spore cortex biosynthesis protein YabQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.810 |
| AJG96805.1 | hup | LF65_00114 | LF65_00113 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.888 |
| AJG96805.1 | pheA | LF65_00114 | LF65_05112 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Bifunctional chorismate mutase/prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.422 |
| AJG96807.1 | AJG96805.1 | LF65_00116 | LF65_00114 | Spore cortex biosynthesis protein YabQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.810 |
| AJG96807.1 | hup | LF65_00116 | LF65_00113 | Spore cortex biosynthesis protein YabQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.796 |
| feoA | hup | LF65_04706 | LF65_00113 | Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.673 |
| feoA | kup | LF65_04706 | LF65_01373 | Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Potassium transporter Kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family. | 0.661 |
| feoA | kup-2 | LF65_04706 | LF65_02203 | Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Potassium transporter Kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family. | 0.661 |
| feoA | metC_1 | LF65_04706 | LF65_00700 | Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.690 |
| hup | AJG96805.1 | LF65_00113 | LF65_00114 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.888 |
| hup | AJG96807.1 | LF65_00113 | LF65_00116 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Spore cortex biosynthesis protein YabQ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.796 |
| hup | feoA | LF65_00113 | LF65_04706 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.673 |
| hup | kup | LF65_00113 | LF65_01373 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Potassium transporter Kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family. | 0.686 |
| hup | kup-2 | LF65_00113 | LF65_02203 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Potassium transporter Kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family. | 0.686 |
| hup | metC_1 | LF65_00113 | LF65_00700 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.683 |
| hup | pheA | LF65_00113 | LF65_05112 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Bifunctional chorismate mutase/prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.722 |
| hup | rpsO | LF65_00113 | LF65_01333 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.688 |
| hup | rpsT | LF65_00113 | LF65_00902 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.688 |
| hup | topA | LF65_00113 | LF65_01312 | DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.674 |
| kup | feoA | LF65_01373 | LF65_04706 | Potassium transporter Kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family. | Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.661 |
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