Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AJG98004.1 | ahpC | LF65_01392 | LF65_03505 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.616 |
AJG98004.1 | perR | LF65_01392 | LF65_01471 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. | 0.629 |
AJG98004.1 | rbr3A_2 | LF65_01392 | LF65_01511 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.404 |
LF65_02511 | rbr3A_2 | LF65_02511 | LF65_01511 | Two-component system response regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.432 |
ahpC | AJG98004.1 | LF65_03505 | LF65_01392 | Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.616 |
ahpC | perR | LF65_03505 | LF65_01471 | Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. | 0.813 |
ahpC | rbr3A_2 | LF65_03505 | LF65_01511 | Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.514 |
perR | AJG98004.1 | LF65_01471 | LF65_01392 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.629 |
perR | ahpC | LF65_01471 | LF65_03505 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. | Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.813 |
perR | rbr3A_2 | LF65_01471 | LF65_01511 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.408 |
rbr3A_2 | AJG98004.1 | LF65_01511 | LF65_01392 | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.404 |
rbr3A_2 | LF65_02511 | LF65_01511 | LF65_02511 | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | Two-component system response regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.432 |
rbr3A_2 | ahpC | LF65_01511 | LF65_03505 | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.514 |
rbr3A_2 | perR | LF65_01511 | LF65_01471 | Reverse rubrerythrin-1; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. | 0.408 |