STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJH00996.1Zn peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)    
Predicted Functional Partners:
xre_2
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.852
AJG96991.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
AJG97356.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
AJG97421.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
AJG99751.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
AJH00332.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
AMK50473.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.661
AJH00994.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
AJH00236.1
Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.462
AJH01080.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
Your Current Organism:
Clostridium beijerinckii
NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.