STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK50424.1Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)    
Predicted Functional Partners:
AMK50425.1
PucR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.691
AJH01592.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.589
AJH00432.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.463
AJG97613.2
Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.452
AJG98518.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.450
AJH00195.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.443
AJH01696.1
O-antigen polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
AJH01477.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
AJG97262.2
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.422
AJG97264.1
Stage V sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.407
Your Current Organism:
Clostridium beijerinckii
NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.