STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW49534.1DNA-binding transcriptional regulator, MarR family. (145 aa)    
Predicted Functional Partners:
SCW49249.1
PTS system, sucrose-specific IIC component.
     
 0.848
SCW49550.1
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
  
 0.814
SCW49522.1
Flavodoxin.
 
    0.775
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.534
SCW63120.1
Hypothetical protein.
  
 
  0.506
SCW65275.1
Nitroreductase.
  
 
  0.506
SCW68723.1
Putative TM nitroreductase.
  
 
  0.506
Your Current Organism:
Ruminococcaceae bacterium YRB3002
NCBI taxonomy Id: 1520819
Other names: R. bacterium YRB3002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.