STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX88275.1Peptide/nickel transport system permease protein. (275 aa)    
Predicted Functional Partners:
SCX88284.1
Peptide/nickel transport system ATP-binding protein.
 
 0.998
SCY47728.1
Peptide/nickel transport system ATP-binding protein.
 
 0.997
SCX88306.1
Peptide/nickel transport system ATP-binding protein.
 
 0.996
SCX88249.1
Peptide/nickel transport system permease protein.
 
 0.994
SCY47743.1
ABC transporter.
 
 0.991
SCX88235.1
Peptide/nickel transport system substrate-binding protein.
 0.979
SCY16885.1
Peptide/nickel transport system permease protein.
 
 0.977
SCY47669.1
Peptide/nickel transport system permease protein.
 
 0.974
SCY16832.1
Peptide/nickel transport system ATP-binding protein.
 
 0.972
SCY47707.1
Peptide/nickel transport system substrate-binding protein.
 0.947
Your Current Organism:
Lachnospiraceae bacterium XPB1003
NCBI taxonomy Id: 1520825
Other names: L. bacterium XPB1003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.