STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY13131.1Hypothetical protein. (553 aa)    
Predicted Functional Partners:
SCY07645.1
Hypothetical protein.
    
  0.919
SCY15836.1
Penicillin-binding protein 1A.
    
 0.887
SCY50047.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.856
SCY40352.1
Cell wall-associated hydrolase, NlpC family.
 
 
 0.853
SCX79113.1
SH3 domain-containing protein.
  
 
 0.833
SCX88723.1
SH3 domain-containing protein.
  
 
 0.833
SCX92858.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.831
SCY44796.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.831
SCY32987.1
Hypothetical protein.
  
   0.817
SCY37360.1
Membrane associated serine protease, rhomboid family.
  
   0.817
Your Current Organism:
Lachnospiraceae bacterium XPB1003
NCBI taxonomy Id: 1520825
Other names: L. bacterium XPB1003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.